Publications

Below you will find an overview of the publications of Center SynGen, including by directly funded researchers, research groups, and platforms, and seed funded projects.

Structural dynamics in the CENP-A nucleosome impacted by protein-protein interactions with centromere protein N

Ghosh Moulick, A., Erhardt, S., Wenzel, W., Kozlowska, M.

Jun 2026

Nanoscale.

Stem Cell Differentiation Disperses Transcriptional Clusters via a Conserved Surface-Condensate Trajectory

Klingberg, T., Wachter, I., Pancholi, A., Akyel, M., Gohar, Y., Kumar, P., Fernandes, A. M., Bao, Y., Schmidt-Heydt, A., Piepers, M., Günthel, A., Sobucki, M., Kämmer, E., Eroğlu-Kayıkçı, S., Allgeier, S., Erhardt, S., Zaburdaev, V., Ferrai, C., Hilbert, L.

Jun 2026

Advanced Science.

Refining sequence-to-activity models by increasing model resolution

Chandra, N. A., Hu, Y., Buenrostro, J. D., Mostafavi, S., Sasse, A.

May 2026

Bioinformatics Advances.

A safety-centric perspective on innovation and risk in the use of artificial intelligence in genomics

Hassan, A. H., Anžel, A., İlgen, B., Luchner, M., Schramowski, P., Blasse, A., Mayer, J. U., Ladewig, K., Hattab, G., Sprang, M.

Apr 2026

Trends in Genetics.

Hepatitis E virus replication is maintained in proliferative cells within the intestinal crypt

Prallet, S., Maier, N., Li, A., Afting, C., Huang, H-E., Hu, J., Toprak, E., Keya, D. P., Colasanti, O., León-Janampa, N., Marlet, J., Beisel, C., Mogler, C., Puchas, P., Behrendt, P., Boettler, T., Steinmann, E., Saha, S., Laketa, V., Lohmann, V., Wittbrodt, J., Hermann C., Dill, M. T., Dao Thi, V. L.

Apr 2026

Science Advances, 12 (14).

HCR-Proxy resolves site-specific proximal RNA microenvironments at subcompartmental resolution

Trupej, A., Bergant, V., Novljan, J., Dodel, M., Klobučar, T., Adamek, M., Lee, F. C. Y., Yap, K., Makeyev, E., Kokot, B., Čehovin Zajc, L., Pichlmair, A., Urbančič, I., Mardakheh, F. K., Modic, M.

Feb 2026

Nucleic Acids Research, 54 (4).

Integrative profiling of condensation-prone RNAs during early development

Klobučar, T., Novljan, J., Iosub, I. A., Kokot, B., Urbančič, I., Jones, D. M., Chakrabarti, A. M., Luscombe, N. M., Ule, J., Modic, M.

Feb 2026

Cell Genomics, 6 (2).

Block copolymer concepts of how transcription organizes the stem cell genome

Bao, Y., Ma, S., Shen, X., Hilbert, L.

Feb 2026

Current Opinion in Genetics & Development, 96.

Engineering the Link: From Genome Interaction Maps to Functional Insight

Petersen, F., Westermann, S., Smialkovska, V., Mathony, J., Feldmann, A., Niopek, D.

Nov 2025

Advanced Biology, 9 (12).

Integrative Approaches for DNA Sequence-Controlled Functional Materials

Gadzekpo, A., Oprzeska-Zingrebe, E. A., Kozlowska, M., Hilbert, L., Stoev, I. D.

Nov 2025

Advanced Functional Materials, 36 (18).

Revisiting the question: When is a centromere not a kinetochore?

Corless, A., Thangavel, G., Erhardt, S.

Oct 2025

Chromosome Res, 33 (23).

Chromatin-associated condensates as an inspiration for the system architecture of future DNA computers

Hilbert, L., Gadzekpo, A., Lo Vecchio, S., Wellhäusser, M., Tschurikow, X., Prizak, R., Becker, B., Burghart, S., Oprzeska-Zingrebe, E., A.

Oct 2025

Annals of the New York Academy of Sciences, 1552 (1).

Modelling the melting of DNA oligomers with non-inert dangling ends

Soto, A., Mambretti, F., Locatelli, E., Stoev, I. D.

Aug 2025

Front. Mol. Biosci., 12.

Mechanically Tunable DNA Hydrogels as Prospective Biosensing Modules

Can, A. E., Ali, A. W. U., Oelschlaeger, C., Willenbacher, N., Stoev, I, D.

May 2025

Macromolecular Rapid Communications, 46 (23).

An Implicit Solvation Model for Binding Free Energy Estimation in Nonaqueous Solution

Elsing, D., Wenzel, W., Kozlowska, M.

Jan 2025

J. Phys. Chem. B, 129 (6).

Impact of DNA on interactions between core proteins of Hepatitis B virus-like particles comprising different C-terminals

Pusara, S., Wenzel, W., Kozlowska, M.

Apr 2024

International Journal of Biological Macromolecules, 263 (2).

Der Zellkern als Vorbild für zukünftige DNA-Computerchips?

Hilbert, L.

Feb 2024

Biologische Informationsverarbeitung, 30.

Publications

Ghosh Moulick, A., Erhardt, S., Wenzel, W., Kozlowska, M.

Klingberg, T., Wachter, I., Pancholi, A., Akyel, M., Gohar, Y., Kumar, P., Fernandes, A. M., Bao, Y., Schmidt-Heydt, A., Piepers, M., Günthel, A., Sobucki, M., Kämmer, E., Eroğlu-Kayıkçı, S., Allgeier, S., Erhardt, S., Zaburdaev, V., Ferrai, C., Hilbert, L.

Chandra, N. A., Hu, Y., Buenrostro, J. D., Mostafavi, S., Sasse, A.

Hassan, A. H., Anžel, A., İlgen, B., Luchner, M., Schramowski, P., Blasse, A., Mayer, J. U., Ladewig, K., Hattab, G., Sprang, M.

Trupej, A., Bergant, V., Novljan, J., Dodel, M., Klobučar, T., Adamek, M., Lee, F. C. Y., Yap, K., Makeyev, E., Kokot, B., Čehovin Zajc, L., Pichlmair, A., Urbančič, I., Mardakheh, F. K., Modic, M.

Klobučar, T., Novljan, J., Iosub, I. A., Kokot, B., Urbančič, I., Jones, D. M., Chakrabarti, A. M., Luscombe, N. M., Ule, J., Modic, M.

Bao, Y., Ma, S., Shen, X., Hilbert, L.

Petersen, F., Westermann, S., Smialkovska, V., Mathony, J., Feldmann, A., Niopek, D.

Gadzekpo, A., Oprzeska-Zingrebe, E. A., Kozlowska, M., Hilbert, L., Stoev, I. D.

Corless, A., Thangavel, G., Erhardt, S.

Hilbert, L., Gadzekpo, A., Lo Vecchio, S., Wellhäusser, M., Tschurikow, X., Prizak, R., Becker, B., Burghart, S., Oprzeska-Zingrebe, E., A.

Soto, A., Mambretti, F., Locatelli, E., Stoev, I. D.

Can, A. E., Ali, A. W. U., Oelschlaeger, C., Willenbacher, N., Stoev, I, D.

Elsing, D., Wenzel, W., Kozlowska, M.

Pusara, S., Wenzel, W., Kozlowska, M.

Hilbert, L.

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